Interactive HTML report — stress

Writes an HTML page (its JavaScript dependencies in a lib folder beside it) with the verdict, the summary table and two interactive figures built with plotly: the bubble swarm, where hovering a bubble lists the specifications that give that estimate, and the deletion strip, where hovering a dot names the subject removed and shows the refit's estimate and p-value. Needs plotly and htmlwidgets.

Usage

stress_html(result, file, digits = 2, mask_ids = TRUE)

Arguments

result: A stress_result from run_plan().
file: Path of the HTML file to write. There is no default, so nothing is written unless a path is given.
digits: Rounding used to group estimates into bubbles.
mask_ids: Replace subject identifiers with sequence numbers (on by default: the page is the deliverable most likely to leave the organisation).

Value

The file path, invisibly.

Examples

# \donttest{
small <- mmrm::fev_data[mmrm::fev_data$USUBJID %in% paste0("PT", 1:60), ]
spec <- stress_spec(small, "FEV1", "USUBJID", "AVISIT", "ARMCD", "PBO", covariates = ~ FEV1_BL,
                    covariance = "cs", method = "Satterthwaite", vcov = "Asymptotic")
plan <- stress_plan(spec, covariance = list(structures = c("cs", "ar1h")), inference = NULL,
                    covariates = NULL, weights = FALSE, loo = list(by = "RACE"), permute = NULL,
                    reference = NULL, estimator = NULL, fragility = NULL)
if (requireNamespace("plotly", quietly = TRUE) && requireNamespace("htmlwidgets", quietly = TRUE))
  stress_html(run_plan(plan), file.path(tempdir(), "stress.html"))
# }