Write regulatory-style tables and the census

Writes the per-family summary, the rows that crossed alpha or left the interval, the deletion-search path and the full census. CSV files are always written; with flextable and officer installed, a Word document with the tables in a standard clinical-report layout is written too, and an RTF version of each table.

Usage

stress_tables(
  result,
  dir,
  name = "stress",
  formats = c("csv", "docx", "rtf"),
  digits = 3,
  mask_ids = FALSE
)

Arguments

result

A stress_result from run_plan().

dir

Directory to write into (created if needed). There is no default, so nothing is written unless a location is given.

name

File stem.

formats

Any of "csv", "docx", "rtf".

digits

Decimal places in the formatted tables.

mask_ids

Replace subject identifiers with sequence numbers.

Value

The paths written, invisibly.

Examples

# \donttest{
small <- mmrm::fev_data[mmrm::fev_data$USUBJID %in% paste0("PT", 1:60), ]
spec <- stress_spec(small, "FEV1", "USUBJID", "AVISIT", "ARMCD", "PBO", covariates = ~ FEV1_BL,
                    covariance = "cs", method = "Satterthwaite", vcov = "Asymptotic")
plan <- stress_plan(spec, covariance = list(structures = c("cs", "ar1h")), inference = NULL,
                    covariates = NULL, weights = FALSE, loo = list(by = "RACE"), permute = NULL,
                    reference = NULL, estimator = NULL, fragility = NULL)
stress_tables(run_plan(plan), dir = tempdir(), formats = "csv")
# }